Building the operating intelligence for the molecular world.

Explore the intelligence loop

Rayca learns why therapeutic candidates succeed or fail, then uses that knowledge to guide design, simulation and experiment across modalities.

Each program expands what the system can understand, design and test.

Rayca agentRunning

  1. Read the biology A deep pocket with a mutant cysteine
  2. Match the modality Oral small molecule, covalent
  3. Score Pocket occupancy
  4. Score Covalent reactivity
  5. Score Absorption and clearance
  6. Return ranked designs With the reasoning exposed

Candidate · iteration 1

RC-0512

covalent KRAS G12C inhibitor

MPO

0.42

PotencySelectivityReactivitySolubilityPermeabilitySafety
Starting designCurrent design
  • Pocket occupancy–
  • Warhead kinact/Ki–
  • cLogP–
  • Caco-2 Papp–
Small molecule

KRAS G12C with a covalent inhibitor, PDB 6OIM

Advancing molecular intelligence with institutions at the scientific frontier.

Our collaborators connect molecular intelligence to frontier biology, translational science and therapeutic creation. Rayca is part of the DayOne Accelerator in Basel and Health Incubator Helsinki.

01

Therapeutic co-development partners

  • Stanford Medicine
  • UC San Diego
  • University of Arkansas for Medical Sciences
  • The University of New Mexico
  • ASAKE Biotechnology
  • dP Therapeutics
02

Accelerator and ecosystem partners

  • DayOne Accelerator
  • Health Incubator Helsinki
  • NVIDIA Inception
  • Basel Area Business & Innovation
  • Kuopio Health

The attrition problem

Therapeutic R&D generates valuable knowledge in every program.

Too little of it is available when the next candidate is designed.

Evidence is scattered across experiments, models, reports and teams. When a candidate fails, the underlying reason rarely informs future design across programs or modalities.

Failure analysis and design constraints

Representative oncology program

Molecular design question

What did every prior molecule prove this design must avoid?

  • Assays

    Assay systems and LIMS

    18,240 molecular outcomes

  • Chemistry

    Registries and notebooks

    3,120 synthesized compounds

  • Structures

    Experimental and modelled

    46 conformational records

  • Developability

    ADME and safety reports

    212 liability reports

  • Decisions

    Reviews and meeting notes

    390 program reviews

  • Scientific expertise

    Distributed across teams

    14 domain specialists

The failure is documented in three systems. Its design principle exists in none.

15 years

Typical target-to-approval timeline

$2.6B

Cost per approved drug

90%

Of clinical candidates lost

Commonly cited industry estimates. Each cell is one clinical candidate.

Why it matters

Rayca preserves supported failure patterns as design principles for future candidates.

Rayca connects molecular evidence, models, simulations and experiments.

The platform

A shared intelligence guides what happens next.

The science

The platform builds a living understanding of each therapeutic program, including candidates, biological context, predictions, experimental outcomes and decisions. New results refine the next design cycle.

The compute

Across successive programs, that understanding can grow toward molecular superintelligence.

The architecture of operating molecular intelligence

Evidence, models and physics
  • Sovereign by design. Your science and intelligence stay yours.
  • Auditable decision lineage. Evidence, methods and uncertainty remain exposed.
  • Calibrated on each DMTA cycle. New assay results extend the program-specific evidence base.

Layer 04 · Governed execution

96 jobs governed

Program questions are translated into coordinated models and simulations.

Simulation on HPCModel inference on GPUOther work

  1. PlanNine simulations, within the cycle budget
  2. AllocateDynamics and free energy on HPC, models on GPU
  3. SuperviseTwo failed jobs restarted from checkpoint
  4. RecordInputs, method versions and outputs kept for review
  • Plans the work

    The program decision determines the models and simulations required.

  • Governs execution

    GPU and HPC follow program policy.

  • Keeps the result

    Outputs return to the program with context and provenance.

Advances every computational outcome back into the world model

Scientific agency

Coordinate models, simulations and experiments.

Keep the scientific reasoning available for review.

Rayca plans the analyses required by a program question, runs the relevant models and simulations and checks the results before they reach the project team.

Agent run 4-117

Running

Goal: nominate 8 analogues for cycle 5 that clear C-07 to C-12 with predicted ΔΔG at or below −1.0 kcal/mol. Read on a representative KRAS G12C series.

3:56
Elapsed
7
Agents
9 of 12
Steps done
64 h
GPU, of 160
0:001:002:003:004:005:00
Planner
Evidence
Memory
Design
Simulation
Compute
Critic

Events

  • 3:56Job 71 preempted, resubmitted on gpu-h100-07
  • 3:51RBFE edge RC-0504 to RC-0440 converged, −1.62 ± 0.21 kcal/mol
  • 2:26Plan revised: R3 re-enumerated under C-09, RC-0523 replaces RC-0521
  • 2:12Flag: RC-0521 bound-state strain 2.4 kcal/mol, above C-09
  • 0:44Models retrained on cycle 4; rule C-12 written
  • Adaptive plan

    The plan changes when evidence changes.

  • Recorded execution

    Every input, method and reason remains inspectable.

  • Critic in the loop

    Contradictions are challenged before review.

Institutional memory

Every failure becomes a rule the next molecule must respect.

Ask why a candidate failed and the answer is already connected to the evidence.

Rayca keeps the supported reason a compound dropped out and turns it into a constraint that guides every future design, across programs and modalities.

Why did RC-0521 drop out?
It carries a basic amine on the piperazine. Three earlier compounds with that group showed a Caco-2 efflux ratio above 10.
Can we keep the scaffold?
Yes. I removed the amine from the next series and added the constraint to every future design.
Design principle saved

Institutional memory

A documented failure is saved as a design principle, so the next series never repeats it.

Saved design principle

No basic amine on the piperazine.

PARP2 windowcLogP < 3No basic amine

Applied automatically to every enumerated series from cycle 5 onward.

Our approach

A therapeutic candidate must work across many dimensions.

Rayca evaluates biological activity, developability and delivery together.

Discovery, development and translational teams each see a different part of the candidate. Rayca brings their evidence into a shared view before major design decisions are fixed.

Integrated candidate assessment

RC-0512
  • Medicinal chemistrySAR, synthetic tractability
  • Structural biologyBinding mode, pocket states
  • BiochemistryPARP1 and PARP2 potency
  • DMPKSolubility, permeability, clearance
  • SafetyhERG, blood counts
  • TranslationalExposure at projected dose
Integrated judgment: advance

3 vectors open

H-bond to Gly863

PARP1 1.2 nM

85 µM soluble

hERG > 30 µM

50 mg once daily

Why it matters

Project teams review an integrated candidate profile before committing the next experiment.

One DMTA cycle

A therapeutic design cycle that learns from its own results.

Evidence, design, simulation and experiment in continuous exchange.

A representative PARP1 program shows how evidence, learned design principles, new candidates, simulation and project review connect across one cycle.

1Observe · Molecular perception

Connect the program’s molecular evidence.

Assays, structures, chemistry, DMPK, safety and project decisions are linked with provenance. Conflicting measurements remain side by side.

1Molecular perceptionCycle 4

Evidence entering the molecular world model

  • Compound registry3,120 compounds
  • PARP1 and PARP2 assays9,804 values
  • Crystal structures12 files
  • ADME panel418 results
  • Rat safety study1 report
  • Meeting notes64 documents
4,612
Records resolved
6
Sources
2
Conflicts held

2Learn · Principle formation

Learn from why earlier candidates failed.

Rayca links attrition events to molecular causes and supporting assays. Recurring liabilities constrain the next enumerated series.

2Principle formationCycle 4

Attrition matrix, compounds by assay

PARP1 IC50PARP2 IC50Kinetic solubilityCaco-2 effluxhERGRat blood counts
RC-0412
RC-0433
RC-0451
RC-0467
RC-0480
RC-0486
RC-0490
RC-0494
RC-0497
RC-0503

Each cell is one measured outcome. Red cells failed their target product profile threshold.

Failure mode

P-gp efflux

Caco-2 efflux ratio above 10, limiting cellular target engagement.

Design principle, now executable

No basic amine on the piperazine

Seen in 3 compounds, backed by 9 measurements

Basic amine on the piperazine, highlighted
Basic amine on the piperazine, highlighted

3Design · Intelligence-guided design

Generate new candidates within the program’s design principles.

Generative models explore new chemical matter inside the boundaries established by prior success and failure. Designs that violate known principles are removed before they consume experimental capacity.

3Intelligence-guided designCycle 4

Reference

Olaparib, the reference chemotype

61 proposed, 9 pass every rule

Each cell is one generated molecule. Ink passed every constraint, red broke a learned constraint, grey scored below the potency model.

  • RC-0512: Cyanopyridine replaces the amide cap

    RC-0512

    Cyanopyridine replaces the amide cap

    • PARP2 windowNext step
    • cLogP below 3Pass
    • No basic aminePass
  • RC-0515: A nitrogen added to the core ring

    RC-0515

    A nitrogen added to the core ring

    • PARP2 windowNext step
    • cLogP below 3Pass
    • No basic aminePass
  • RC-0518: A spiro ring replaces the piperazine

    RC-0518

    A spiro ring replaces the piperazine

    • PARP2 windowNext step
    • cLogP below 3Pass
    • No basic aminePass
  • RC-0521: A basic amine on the piperazine

    RC-0521

    A basic amine on the piperazine

    • PARP2 windowNext step
    • cLogP below 3Pass
    • No basic amineBreaks rule

4Reason · Physical reasoning

Test promising candidates with physical simulation.

Docking, molecular dynamics and relative binding free energy test surviving designs at increasing resolution. Rayca selects, runs and records the computation required for the decision.

4Physical reasoningCycle 4

Runs on the GPU fleet

  • Ensemble docking9 compounds · CPU
  • Molecular dynamics, 100 ns6 compounds · GPU
  • RBFE, PARP13 compounds · GPU
  • RBFE, PARP23 compounds · GPU

Blue cells run this campaign.

Predicted PARP2 / PARP1 window

  • RC-0512180x
  • RC-0518140x
  • RC-051540x

Line marks the 100-fold constraint.

5Act · Molecular action

Return a prioritized design and experiment plan.

The cycle returns a prioritized synthesis and experiment plan with its reasoning exposed. Scientists make the decision, and every observed result expands the intelligence behind the next cycle.

5Molecular actionCycle 4

Cycle 5 synthesis plan

  1. 01SynthesiseRC-0512 and RC-0518Pass every rule and are predicted to favour PARP1 by 140 to 180 times.
  2. 02Run firstPARP2 counter-screen and 7-day rat CBCConfirms the window in vitro and in vivo before scale-up.
  3. 03DeprioritiseRC-0515 and RC-0521RC-0515 misses the selectivity threshold; RC-0521 violates the efflux constraint.

4,612

records

3

constraints

9

simulations

1

partner assay

RC-0512 against the target product profile

  • PARP1 IC50, predicted1.8 nM
  • PARP2 / PARP1 window180x
  • cLogP2.88
  • Basic amineNone
  • Caco-2 efflux ratio, predicted1.9

Molecular intelligence, by cycle

C1

C2

C3

C4

C5

Lab results return to the program record and cycle 5 starts from there.

PARP1-selective inhibitor program

Representative program. Values are illustrative.

Lab in the loop

Choose the experiment that resolves the most important uncertainty.

Return the result to the next design cycle.

When evidence is thin, Rayca can identify the experiment that will resolve the most valuable uncertainty, match it to a partner laboratory and prepare it for your approval. The observed result returns directly to the molecular world model.

01 / 04Design

Which experiment resolves the most?

  • PARP2 cellular counter-screen0.92
  • Kinetic solubility, three pH0.48
  • Caco-2 permeability0.31

Selected by expected information gain

Why it matters

The next design cycle incorporates the new assay result and its provenance.

Lab in the loop

The agent picks the experiment that resolves the most.

When evidence is thin, Rayca proposes the one experiment worth running next.

It matches the experiment to a partner laboratory and prepares it for your approval. The observed result returns directly to the molecular world model and the next design cycle.

Which experiment separates RC-0512 and RC-0518?
A PARP2 cellular counter-screen. It resolves the selectivity gap the models are least certain about.
Run it.
Matched to a partner lab and prepared for your approval. The result returns to the model.
Sent for approval

Lab in the loop

Rayca chooses the decisive experiment, waits for your approval, and learns from the result.

PARP2 cellular counter-screen

Result returned to the model

Selectivity rule updated

Run in a partner lab

The plate the agent designed reads out live, and every well returns to the molecular world model.

Where we differ

Candidate generation now scales across modalities.

Selection still depends on biological evidence and experimental context.

Rayca evaluates proposed candidates against what the program has learned, using biological evidence, predictive models, physical simulation and developability. Project teams can inspect the basis for each priority.

Failure patterns guide future designs

Supported reasons for failure remain available as principles for future candidates.

  • PARP2 window
  • cLogP below 3
  • No basic amine

The scientific question shapes the work

Rayca selects and supervises the models and simulations needed for the program decision.

RBFE campaign · 48 of 48 GPUs allocated

Recommendations retain scientific lineage

Recommendations trace to the molecules, evidence, methods and uncertainty that produced them.

Synthesise RC-0512›RBFE run 0418›parp2_assay.csv›Row 212

Scientists remain in command

Rayca expands the team’s capacity to reason and execute. Scientists retain every go and no-go decision.

Synthesise RC-0512 and RC-0518Approved by project team

Why it matters

Experimental capacity is focused on candidates supported by the program’s evidence.

Partnering

Apply Rayca to a difficult therapeutic program.

Start with a consequential molecular decision.

A first engagement focuses Rayca on one molecular decision that matters. Inside your environment, the system connects the evidence, forms design principles, runs targeted computation and returns prioritized designs and experiments with their reasoning exposed.

Program intelligence engagement

Defined therapeutic program
  1. Define the decision

    A defined program and consequential question

  2. Establish the world model

    Evidence connected inside your environment

  3. Run the intelligence loop

    Principles, design, physics and compute

  4. Return molecular action

    Prioritized designs and experiments

  • Program intelligence

    The hidden constraints, unresolved questions and next actions inside a running program.

  • Molecular second opinion

    Independent reasoning before the next synthesis or IND-enabling commitment.

  • Failure-to-principle analysis

    Past attrition converted into constraints the next design must respect.

  • Intelligence-guided design cycle

    New matter designed, physically tested and prioritized with complete lineage.

What the intelligence loop returns

Program measurements integrated4,612
Recurring failure modes3
Constrained designs scored61
Simulated in physics9
Prioritised for synthesis2
  • Molecular world model

    Program evidence connected with provenance.

  • Executable design principles

    Failure modes converted into future constraints.

  • Prioritized molecular actions

    What to design, simulate and test next.

  • Reasoning for each recommendation

    Evidence, methods and uncertainty exposed.

Small moleculesPeptidesAntibodiesNanobodiesDegraders

Across modalities

Small molecules, Peptides, Antibodies, Nanobodies, Degraders.

Vision

Rayca’s current platform learns within therapeutic programs.

Our research direction is molecular superintelligence.

Each program expands what the institution knows about molecular design, biological response and therapeutic performance. Over time, Rayca can connect biological hypotheses with development-candidate design across modalities.

The path to molecular superintelligence

Our direction
CapabilityIntelligence compounding inside each institution
TodayL1L2L3L4L5
One hard programSubsequent programs and experiments
  1. L1ConnectedCompounds, assays and decisions share traceable molecular context.Today
  2. L2Principle-formingObserved outcomes define evidence-linked molecular constraints.Today
  3. L3OperationalThe system reasons, designs and runs computation.Today
  4. L4ExperimentalIt proposes and coordinates experiments with scientific approval, then learns from reality.In development
  5. L5Molecular superintelligenceIt connects biological hypotheses with development-candidate design across disciplines and modalities.Our direction

The destination is an intelligence capable of understanding and engineering molecular systems beyond the reach of any individual model, discipline or program.

Meet the team
Today
  • Connected
  • Principle-forming
  • Operational

Running inside therapeutic programs now.

Next
  • Experimental
  • Molecular superintelligence

Experimental: in development. Molecular superintelligence: our direction.

Bring us the molecular problem your current tools cannot resolve.